STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFU20044.1RNA polymerase sigma-70 factor, ECF subfamily. (211 aa)    
Predicted Functional Partners:
SFU20040.1
FecR protein.
 
   0.876
SFU15524.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.634
SFU17790.1
PAS domain S-box-containing protein.
  
 
 0.590
SFU20029.1
Starch-binding associating with outer membrane.
 
 
   0.561
SFU20035.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.548
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.534
SFT68658.1
Mycothiol system anti-sigma-R factor.
   
   0.528
SFT37136.1
Sigma-70 region 2; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.505
SFU02024.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.504
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.501
Your Current Organism:
Algoriphagus locisalis
NCBI taxonomy Id: 305507
Other names: A. locisalis, Algoriphagus locisalis Yoon et al. 2005, DSM 23445, JCM 12597, KCTC 12310, strain MSS-170
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.