STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFU20275.1LemA protein. (188 aa)    
Predicted Functional Partners:
SFU20284.1
Protein of unknown function.
 
     0.820
SFU20279.1
Protein of unknown function.
  
    0.774
SFU20265.1
Hypothetical protein.
       0.714
SFU20270.1
Hypothetical protein.
       0.714
SFU20253.1
Hypothetical protein.
       0.676
SFU20259.1
Hypothetical protein.
       0.676
SFU20248.1
Hypothetical protein.
       0.662
SFU20244.1
SH3 domain-containing protein.
       0.644
SFU20236.1
Trypsin-like peptidase domain-containing protein.
  
    0.558
SFU20232.1
Hypothetical protein.
       0.557
Your Current Organism:
Algoriphagus locisalis
NCBI taxonomy Id: 305507
Other names: A. locisalis, Algoriphagus locisalis Yoon et al. 2005, DSM 23445, JCM 12597, KCTC 12310, strain MSS-170
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.