SFT88112.1 protein (Algoriphagus locisalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SFT88112.1

Putative heme-binding domain-containing protein. (886 aa)

Predicted Functional Partners:

SFT88083.1

0.796

SFT86390.1

0.722

SFT42331.1

0.670

SFU09339.1

0.630

SFT46325.1

0.613

SFU19528.1

0.573

SFU18883.1

0.568

SFU09353.1

0.553

SFT88098.1

0.552

SFU09366.1

0.541

Your Current Organism:

Algoriphagus locisalis

NCBI taxonomy Id: 305507
Other names: A. locisalis, Algoriphagus locisalis Yoon et al. 2005, DSM 23445, JCM 12597, KCTC 12310, strain MSS-170

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SFT42331.1	SFT88112.1	SAMN04489724_0691	SAMN04489724_2527	Thiopeptide-type bacteriocin biosynthesis domain-containing protein.	Putative heme-binding domain-containing protein.	0.670
SFT46325.1	SFT88112.1	SAMN04489724_0857	SAMN04489724_2527	Thiopeptide-type bacteriocin biosynthesis domain-containing protein.	Putative heme-binding domain-containing protein.	0.613
SFT86390.1	SFT88112.1	SAMN04489724_2412	SAMN04489724_2527	Cytochrome c.	Putative heme-binding domain-containing protein.	0.722
SFT86390.1	SFU09339.1	SAMN04489724_2412	SAMN04489724_3891	Cytochrome c.	Putative membrane-bound dehydrogenase domain-containing protein.	0.909
SFT86390.1	SFU09353.1	SAMN04489724_2412	SAMN04489724_3892	Cytochrome c.	Azurin.	0.881
SFT86390.1	SFU09366.1	SAMN04489724_2412	SAMN04489724_3893	Cytochrome c.	Type 1 glutamine amidotransferase (GATase1).	0.705
SFT86390.1	SFU19528.1	SAMN04489724_2412	SAMN04489724_0143	Cytochrome c.	Putative membrane-bound dehydrogenase domain-containing protein; Manually curated.	0.903
SFT88083.1	SFT88098.1	SAMN04489724_2525	SAMN04489724_2526	Repeat domain-containing protein.	Hypothetical protein.	0.667
SFT88083.1	SFT88112.1	SAMN04489724_2525	SAMN04489724_2527	Repeat domain-containing protein.	Putative heme-binding domain-containing protein.	0.796
SFT88083.1	SFU09339.1	SAMN04489724_2525	SAMN04489724_3891	Repeat domain-containing protein.	Putative membrane-bound dehydrogenase domain-containing protein.	0.609
SFT88083.1	SFU09353.1	SAMN04489724_2525	SAMN04489724_3892	Repeat domain-containing protein.	Azurin.	0.470
SFT88083.1	SFU19528.1	SAMN04489724_2525	SAMN04489724_0143	Repeat domain-containing protein.	Putative membrane-bound dehydrogenase domain-containing protein; Manually curated.	0.711
SFT88098.1	SFT88083.1	SAMN04489724_2526	SAMN04489724_2525	Hypothetical protein.	Repeat domain-containing protein.	0.667
SFT88098.1	SFT88112.1	SAMN04489724_2526	SAMN04489724_2527	Hypothetical protein.	Putative heme-binding domain-containing protein.	0.552
SFT88112.1	SFT42331.1	SAMN04489724_2527	SAMN04489724_0691	Putative heme-binding domain-containing protein.	Thiopeptide-type bacteriocin biosynthesis domain-containing protein.	0.670
SFT88112.1	SFT46325.1	SAMN04489724_2527	SAMN04489724_0857	Putative heme-binding domain-containing protein.	Thiopeptide-type bacteriocin biosynthesis domain-containing protein.	0.613
SFT88112.1	SFT86390.1	SAMN04489724_2527	SAMN04489724_2412	Putative heme-binding domain-containing protein.	Cytochrome c.	0.722
SFT88112.1	SFT88083.1	SAMN04489724_2527	SAMN04489724_2525	Putative heme-binding domain-containing protein.	Repeat domain-containing protein.	0.796
SFT88112.1	SFT88098.1	SAMN04489724_2527	SAMN04489724_2526	Putative heme-binding domain-containing protein.	Hypothetical protein.	0.552
SFT88112.1	SFU09339.1	SAMN04489724_2527	SAMN04489724_3891	Putative heme-binding domain-containing protein.	Putative membrane-bound dehydrogenase domain-containing protein.	0.630