Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFT68972.1 | SFT91420.1 | SAMN04489724_1624 | SAMN04489724_2770 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | Putative ATPase. | 0.566 |
SFT68972.1 | SFT98266.1 | SAMN04489724_1624 | SAMN04489724_3150 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | ATP-dependent DNA helicase RecQ. | 0.705 |
SFT68972.1 | SFT98884.1 | SAMN04489724_1624 | SAMN04489724_3204 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | ATP-dependent DNA helicase RecQ. | 0.705 |
SFT68972.1 | SFU20744.1 | SAMN04489724_1624 | SAMN04489724_0356 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | Hypothetical protein. | 0.996 |
SFT68972.1 | polA | SAMN04489724_1624 | SAMN04489724_3902 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.999 |
SFT91368.1 | SFT91385.1 | SAMN04489724_2767 | SAMN04489724_2768 | Ferredoxin, 2Fe-2S. | Thioredoxin reductase (NADPH). | 0.969 |
SFT91368.1 | SFT91404.1 | SAMN04489724_2767 | SAMN04489724_2769 | Ferredoxin, 2Fe-2S. | DNA-binding transcriptional regulator, MarR family. | 0.617 |
SFT91368.1 | SFT91420.1 | SAMN04489724_2767 | SAMN04489724_2770 | Ferredoxin, 2Fe-2S. | Putative ATPase. | 0.484 |
SFT91385.1 | SFT91368.1 | SAMN04489724_2768 | SAMN04489724_2767 | Thioredoxin reductase (NADPH). | Ferredoxin, 2Fe-2S. | 0.969 |
SFT91385.1 | SFT91404.1 | SAMN04489724_2768 | SAMN04489724_2769 | Thioredoxin reductase (NADPH). | DNA-binding transcriptional regulator, MarR family. | 0.638 |
SFT91385.1 | SFT91420.1 | SAMN04489724_2768 | SAMN04489724_2770 | Thioredoxin reductase (NADPH). | Putative ATPase. | 0.436 |
SFT91404.1 | SFT91368.1 | SAMN04489724_2769 | SAMN04489724_2767 | DNA-binding transcriptional regulator, MarR family. | Ferredoxin, 2Fe-2S. | 0.617 |
SFT91404.1 | SFT91385.1 | SAMN04489724_2769 | SAMN04489724_2768 | DNA-binding transcriptional regulator, MarR family. | Thioredoxin reductase (NADPH). | 0.638 |
SFT91404.1 | SFT91420.1 | SAMN04489724_2769 | SAMN04489724_2770 | DNA-binding transcriptional regulator, MarR family. | Putative ATPase. | 0.521 |
SFT91420.1 | SFT68972.1 | SAMN04489724_2770 | SAMN04489724_1624 | Putative ATPase. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.566 |
SFT91420.1 | SFT91368.1 | SAMN04489724_2770 | SAMN04489724_2767 | Putative ATPase. | Ferredoxin, 2Fe-2S. | 0.484 |
SFT91420.1 | SFT91385.1 | SAMN04489724_2770 | SAMN04489724_2768 | Putative ATPase. | Thioredoxin reductase (NADPH). | 0.436 |
SFT91420.1 | SFT91404.1 | SAMN04489724_2770 | SAMN04489724_2769 | Putative ATPase. | DNA-binding transcriptional regulator, MarR family. | 0.521 |
SFT91420.1 | SFT98266.1 | SAMN04489724_2770 | SAMN04489724_3150 | Putative ATPase. | ATP-dependent DNA helicase RecQ. | 0.687 |
SFT91420.1 | SFT98884.1 | SAMN04489724_2770 | SAMN04489724_3204 | Putative ATPase. | ATP-dependent DNA helicase RecQ. | 0.648 |
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