STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GV64_04155Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (302 aa)    
Predicted Functional Partners:
rplF
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.658
GV64_06540
Cytochrome P450; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.
   
  0.615
GV64_19585
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.
   
  0.615
GV64_10180
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.559
GV64_05115
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.538
GV64_01150
Glutamate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the group II decarboxylase family.
    
 0.524
caiC
crotonobetainyl-CoA:carnitine CoA-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.494
GV64_03340
acyl--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.494
GV64_06470
fatty-acid--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.494
GV64_09970
Fatty acid--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.494
Your Current Organism:
Endozoicomonas elysicola
NCBI taxonomy Id: 305900
Other names: DSM 22380, E. elysicola, Endozoicomonas elysicola Kurahashi and Yokota 2007, IAM 15107, JCM 21568, KCTC 12372, strain MKT110
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