STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMG6SMG6 nonsense mediated mRNA decay factor. (1418 aa)    
Predicted Functional Partners:
UPF1
UPF1 RNA helicase and ATPase.
    
 0.986
ZGRF1
Zinc finger GRF-type containing 1.
    
 0.959
SMG5
SMG5 nonsense mediated mRNA decay factor.
   
0.953
TERT
Telomerase reverse transcriptase.
   
 
 0.932
UPF3B
UPF3B regulator of nonsense mediated mRNA decay.
   
 0.926
ENSMICP00000046099
annotation not available
   
 0.925
SMG7
SMG7 nonsense mediated mRNA decay factor.
    
0.916
ENSMICP00000019509
annotation not available
    
 0.914
RBM8A
RNA binding motif protein 8A.
    
 0.914
SMG1
SMG1 nonsense mediated mRNA decay associated PI3K related kinase.
    
 0.899
Your Current Organism:
Microcebus murinus
NCBI taxonomy Id: 30608
Other names: M. murinus, gray mouse lemur, grey mouse lemur
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.