STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RRP8Ribosomal RNA processing 8. (454 aa)    
Predicted Functional Partners:
KPNB1
Karyopherin subunit beta 1.
    
   0.983
PUM3
Pumilio RNA binding family member 3.
   
 
 0.963
GTPBP4
GTP binding protein 4.
 
 
   0.953
DDX27
DEAD-box helicase 27.
   
 
 0.950
NOB1
NIN1 (RPN12) binding protein 1 homolog.
   
  
 0.947
NIFK
Nucleolar protein interacting with the FHA domain of MKI67.
   
   0.944
FTSJ3
FtsJ RNA 2'-O-methyltransferase 3.
   
 
 0.944
BRIX1
Biogenesis of ribosomes BRX1.
   
   0.943
LTV1
annotation not available
   
 
 0.942
RBM28
RNA binding motif protein 28.
   
   0.941
Your Current Organism:
Microcebus murinus
NCBI taxonomy Id: 30608
Other names: M. murinus, gray mouse lemur, grey mouse lemur
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.