STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KDM8Lysine demethylase 8. (416 aa)    
Predicted Functional Partners:
RCCD1
RCC1 domain containing 1.
    
 
 0.910
CCDC130
Coiled-coil domain containing 130.
    
   0.740
NPAS1
Neuronal PAS domain protein 1.
    
 0.678
HIF3A
Hypoxia inducible factor 3 subunit alpha.
    
 0.678
HIF1A
Hypoxia inducible factor 1 subunit alpha.
    
 0.678
EPAS1
Endothelial PAS domain protein 1.
    
 0.678
NPAS3
Neuronal PAS domain protein 3.
    
 0.678
RPS6
annotation not available
    
   0.623
ENSMICP00000017629
annotation not available
    
   0.623
ENSMICP00000023543
annotation not available
    
   0.623
Your Current Organism:
Microcebus murinus
NCBI taxonomy Id: 30608
Other names: M. murinus, gray mouse lemur, grey mouse lemur
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.