STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRPF38Bpre-mRNA processing factor 38B. (544 aa)    
Predicted Functional Partners:
ENSMICP00000006531
annotation not available
    
   0.912
RBM25
RNA binding motif protein 25.
   
  
 0.897
UCHL5
Ubiquitin C-terminal hydrolase L5.
 
      0.866
SRSF11
Serine and arginine rich splicing factor 11.
   
 
 0.826
ENSMICP00000020158
annotation not available
   
 
 0.814
LUC7L3
LUC7 like 3 pre-mRNA splicing factor.
   
 
 0.814
ENSMICP00000032123
annotation not available
   
    0.793
ENSMICP00000045888
annotation not available
   
    0.793
SREK1
Splicing regulatory glutamic acid and lysine rich protein 1.
   
 
 0.788
PRPF4B
pre-mRNA processing factor 4B.
   
  
 0.765
Your Current Organism:
Microcebus murinus
NCBI taxonomy Id: 30608
Other names: M. murinus, gray mouse lemur, grey mouse lemur
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.