R3HDM1 protein (Microcebus murinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

R3HDM1

annotation not available (1104 aa)

Predicted Functional Partners:

POLR3B

0.463

PMPCB

0.448

UQCRC1

0.448

MAPK7

0.434

Your Current Organism:

Microcebus murinus

NCBI taxonomy Id: 30608
Other names: M. murinus, gray mouse lemur, grey mouse lemur

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MAPK7	R3HDM1	ENSMICP00000045130	ENSMICP00000036675	Mitogen-activated protein kinase 7.	annotation not available	0.434
PMPCB	R3HDM1	ENSMICP00000030538	ENSMICP00000036675	Peptidase, mitochondrial processing beta subunit.	annotation not available	0.448
POLR3B	R3HDM1	ENSMICP00000037005	ENSMICP00000036675	RNA polymerase III subunit B.	annotation not available	0.463
R3HDM1	MAPK7	ENSMICP00000036675	ENSMICP00000045130	annotation not available	Mitogen-activated protein kinase 7.	0.434
R3HDM1	PMPCB	ENSMICP00000036675	ENSMICP00000030538	annotation not available	Peptidase, mitochondrial processing beta subunit.	0.448
R3HDM1	POLR3B	ENSMICP00000036675	ENSMICP00000037005	annotation not available	RNA polymerase III subunit B.	0.463
R3HDM1	UQCRC1	ENSMICP00000036675	ENSMICP00000047803	annotation not available	Ubiquinol-cytochrome c reductase core protein 1.	0.448
UQCRC1	R3HDM1	ENSMICP00000047803	ENSMICP00000036675	Ubiquinol-cytochrome c reductase core protein 1.	annotation not available	0.448