SMARCD3 protein (Microcebus murinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SMARCD3

SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3. (483 aa)

Predicted Functional Partners:

SMARCA4

0.994

SMARCB1

0.994

SMARCC2

0.992

PBRM1

0.991

ARID1A

0.991

SMARCA2

0.990

SMARCC1

0.989

DPF3

0.989

BRD7

0.987

ACTL6B

0.985

Your Current Organism:

Microcebus murinus

NCBI taxonomy Id: 30608
Other names: M. murinus, gray mouse lemur, grey mouse lemur

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACTL6B	ARID1A	ENSMICP00000039878	ENSMICP00000033904	Actin like 6B.	AT-rich interaction domain 1A.	0.982
ACTL6B	BRD7	ENSMICP00000039878	ENSMICP00000050397	Actin like 6B.	Bromodomain containing 7.	0.986
ACTL6B	DPF3	ENSMICP00000039878	ENSMICP00000041584	Actin like 6B.	Double PHD fingers 3.	0.982
ACTL6B	PBRM1	ENSMICP00000039878	ENSMICP00000002632	Actin like 6B.	Polybromo 1.	0.994
ACTL6B	SMARCA2	ENSMICP00000039878	ENSMICP00000004717	Actin like 6B.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2.	0.988
ACTL6B	SMARCA4	ENSMICP00000039878	ENSMICP00000035091	Actin like 6B.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4.	0.989
ACTL6B	SMARCB1	ENSMICP00000039878	ENSMICP00000041687	Actin like 6B.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1.	0.995
ACTL6B	SMARCC1	ENSMICP00000039878	ENSMICP00000012525	Actin like 6B.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1.	0.987
ACTL6B	SMARCC2	ENSMICP00000039878	ENSMICP00000030550	Actin like 6B.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2.	0.988
ACTL6B	SMARCD3	ENSMICP00000039878	ENSMICP00000038570	Actin like 6B.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3.	0.985
ARID1A	ACTL6B	ENSMICP00000033904	ENSMICP00000039878	AT-rich interaction domain 1A.	Actin like 6B.	0.982
ARID1A	BRD7	ENSMICP00000033904	ENSMICP00000050397	AT-rich interaction domain 1A.	Bromodomain containing 7.	0.654
ARID1A	DPF3	ENSMICP00000033904	ENSMICP00000041584	AT-rich interaction domain 1A.	Double PHD fingers 3.	0.990
ARID1A	PBRM1	ENSMICP00000033904	ENSMICP00000002632	AT-rich interaction domain 1A.	Polybromo 1.	0.819
ARID1A	SMARCA2	ENSMICP00000033904	ENSMICP00000004717	AT-rich interaction domain 1A.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2.	0.995
ARID1A	SMARCA4	ENSMICP00000033904	ENSMICP00000035091	AT-rich interaction domain 1A.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4.	0.999
ARID1A	SMARCB1	ENSMICP00000033904	ENSMICP00000041687	AT-rich interaction domain 1A.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1.	0.998
ARID1A	SMARCC1	ENSMICP00000033904	ENSMICP00000012525	AT-rich interaction domain 1A.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1.	0.995
ARID1A	SMARCC2	ENSMICP00000033904	ENSMICP00000030550	AT-rich interaction domain 1A.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2.	0.998
ARID1A	SMARCD3	ENSMICP00000033904	ENSMICP00000038570	AT-rich interaction domain 1A.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3.	0.991