STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DDX6DEAD-box helicase 6. (483 aa)    
Predicted Functional Partners:
EDC3
Enhancer of mRNA decapping 3.
   
 0.999
LSM1
LSM1 homolog, mRNA degradation associated.
    
 0.998
PATL1
PAT1 homolog 1, processing body mRNA decay factor.
   
 0.997
DCP2
Decapping mRNA 2.
   
 0.996
CNOT1
CCR4-NOT transcription complex subunit 1.
   
 0.995
CNOT4
CCR4-NOT transcription complex subunit 4.
    
 0.994
DCP1B
Decapping mRNA 1B.
   
 0.992
DCP1A
Decapping mRNA 1A.
   
 0.992
PATL2
PAT1 homolog 2.
   
 0.990
NAXE
NAD(P)HX epimerase.
   
 0.989
Your Current Organism:
Microcebus murinus
NCBI taxonomy Id: 30608
Other names: M. murinus, gray mouse lemur, grey mouse lemur
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.