TTC9B protein (Microcebus murinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TTC9B

Tetratricopeptide repeat domain 9B. (235 aa)

Predicted Functional Partners:

PTGES3

0.822

TRAP1

0.702

TSC1

0.702

HSP90AB1

0.702

ENSMICP00000022820

0.702

ENSMICP00000024441

0.702

HSP90AA1

0.702

ENSMICP00000030737

0.702

RYR2

0.667

RYR1

0.667

Your Current Organism:

Microcebus murinus

NCBI taxonomy Id: 30608
Other names: M. murinus, gray mouse lemur, grey mouse lemur

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSMICP00000022820	HSP90AB1	ENSMICP00000022820	ENSMICP00000012219	annotation not available	Heat shock protein 90 alpha family class B member 1.	0.968
ENSMICP00000022820	PTGES3	ENSMICP00000022820	ENSMICP00000025329	annotation not available	Prostaglandin E synthase 3.	0.984
ENSMICP00000022820	TTC9B	ENSMICP00000022820	ENSMICP00000047835	annotation not available	Tetratricopeptide repeat domain 9B.	0.702
ENSMICP00000024441	HSP90AB1	ENSMICP00000024441	ENSMICP00000012219	annotation not available	Heat shock protein 90 alpha family class B member 1.	0.967
ENSMICP00000024441	PTGES3	ENSMICP00000024441	ENSMICP00000025329	annotation not available	Prostaglandin E synthase 3.	0.984
ENSMICP00000024441	TTC9B	ENSMICP00000024441	ENSMICP00000047835	annotation not available	Tetratricopeptide repeat domain 9B.	0.702
ENSMICP00000030737	HSP90AB1	ENSMICP00000030737	ENSMICP00000012219	annotation not available	Heat shock protein 90 alpha family class B member 1.	0.968
ENSMICP00000030737	PTGES3	ENSMICP00000030737	ENSMICP00000025329	annotation not available	Prostaglandin E synthase 3.	0.984
ENSMICP00000030737	TTC9B	ENSMICP00000030737	ENSMICP00000047835	annotation not available	Tetratricopeptide repeat domain 9B.	0.702
HSP90AA1	HSP90AB1	ENSMICP00000028739	ENSMICP00000012219	annotation not available	Heat shock protein 90 alpha family class B member 1.	0.968
HSP90AA1	PTGES3	ENSMICP00000028739	ENSMICP00000025329	annotation not available	Prostaglandin E synthase 3.	0.984
HSP90AA1	TTC9B	ENSMICP00000028739	ENSMICP00000047835	annotation not available	Tetratricopeptide repeat domain 9B.	0.702
HSP90AB1	ENSMICP00000022820	ENSMICP00000012219	ENSMICP00000022820	Heat shock protein 90 alpha family class B member 1.	annotation not available	0.968
HSP90AB1	ENSMICP00000024441	ENSMICP00000012219	ENSMICP00000024441	Heat shock protein 90 alpha family class B member 1.	annotation not available	0.967
HSP90AB1	ENSMICP00000030737	ENSMICP00000012219	ENSMICP00000030737	Heat shock protein 90 alpha family class B member 1.	annotation not available	0.968
HSP90AB1	HSP90AA1	ENSMICP00000012219	ENSMICP00000028739	Heat shock protein 90 alpha family class B member 1.	annotation not available	0.968
HSP90AB1	PTGES3	ENSMICP00000012219	ENSMICP00000025329	Heat shock protein 90 alpha family class B member 1.	Prostaglandin E synthase 3.	0.985
HSP90AB1	TTC9B	ENSMICP00000012219	ENSMICP00000047835	Heat shock protein 90 alpha family class B member 1.	Tetratricopeptide repeat domain 9B.	0.702
PTGES3	ENSMICP00000022820	ENSMICP00000025329	ENSMICP00000022820	Prostaglandin E synthase 3.	annotation not available	0.984
PTGES3	ENSMICP00000024441	ENSMICP00000025329	ENSMICP00000024441	Prostaglandin E synthase 3.	annotation not available	0.984