STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VPS54VPS54 subunit of GARP complex. (977 aa)    
Predicted Functional Partners:
VPS52
VPS52 subunit of GARP complex.
    
 0.999
VPS53
VPS53 subunit of GARP complex.
   
 0.998
VPS51
VPS51 subunit of GARP complex.
   
 0.981
VPS50
VPS50 subunit of EARP/GARPII complex.
   
 
 0.945
EIPR1
EARP complex and GARP complex interacting protein 1.
    
 
 0.940
STX16
Syntaxin 16.
    
 0.935
COG6
Component of oligomeric golgi complex 6.
    
 0.882
ENSMICP00000008786
annotation not available
    
 0.882
COG3
Component of oligomeric golgi complex 3.
     
 0.873
STX6
Syntaxin 6.
    
 0.872
Your Current Organism:
Microcebus murinus
NCBI taxonomy Id: 30608
Other names: M. murinus, gray mouse lemur, grey mouse lemur
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.