ABCA5 protein (Otolemur garnettii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ABCA5

ATP binding cassette subfamily A member 5. (1642 aa)

Predicted Functional Partners:

ABCA12

0.816

ABCA13

0.807

TRIP12

0.804

ABCD4

0.721

RPL19

0.632

TRAPPC1

0.605

ABCB11

0.600

ELP6

0.586

DHCR7

0.575

ACAT2

0.557

Your Current Organism:

Otolemur garnettii

NCBI taxonomy Id: 30611
Other names: Galago garnetti, Galago garnettii, O. garnettii, small-eared galago

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABCA12	ABCA5	ENSOGAP00000015074	ENSOGAP00000001103	ATP binding cassette subfamily A member 12.	ATP binding cassette subfamily A member 5.	0.816
ABCA12	ABCB11	ENSOGAP00000015074	ENSOGAP00000007074	ATP binding cassette subfamily A member 12.	ATP binding cassette subfamily B member 11.	0.514
ABCA12	ABCD4	ENSOGAP00000015074	ENSOGAP00000012151	ATP binding cassette subfamily A member 12.	ATP binding cassette subfamily D member 4.	0.734
ABCA12	RPL19	ENSOGAP00000015074	ENSOGAP00000017321	ATP binding cassette subfamily A member 12.	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	0.670
ABCA12	TRIP12	ENSOGAP00000015074	ENSOGAP00000001982	ATP binding cassette subfamily A member 12.	Thyroid hormone receptor interactor 12.	0.804
ABCA13	ABCA5	ENSOGAP00000001876	ENSOGAP00000001103	ATP binding cassette subfamily A member 13.	ATP binding cassette subfamily A member 5.	0.807
ABCA13	ABCB11	ENSOGAP00000001876	ENSOGAP00000007074	ATP binding cassette subfamily A member 13.	ATP binding cassette subfamily B member 11.	0.515
ABCA13	ABCD4	ENSOGAP00000001876	ENSOGAP00000012151	ATP binding cassette subfamily A member 13.	ATP binding cassette subfamily D member 4.	0.734
ABCA13	RPL19	ENSOGAP00000001876	ENSOGAP00000017321	ATP binding cassette subfamily A member 13.	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	0.670
ABCA13	TRIP12	ENSOGAP00000001876	ENSOGAP00000001982	ATP binding cassette subfamily A member 13.	Thyroid hormone receptor interactor 12.	0.804
ABCA5	ABCA12	ENSOGAP00000001103	ENSOGAP00000015074	ATP binding cassette subfamily A member 5.	ATP binding cassette subfamily A member 12.	0.816
ABCA5	ABCA13	ENSOGAP00000001103	ENSOGAP00000001876	ATP binding cassette subfamily A member 5.	ATP binding cassette subfamily A member 13.	0.807
ABCA5	ABCB11	ENSOGAP00000001103	ENSOGAP00000007074	ATP binding cassette subfamily A member 5.	ATP binding cassette subfamily B member 11.	0.600
ABCA5	ABCD4	ENSOGAP00000001103	ENSOGAP00000012151	ATP binding cassette subfamily A member 5.	ATP binding cassette subfamily D member 4.	0.721
ABCA5	ACAT2	ENSOGAP00000001103	ENSOGAP00000006551	ATP binding cassette subfamily A member 5.	Acetyl-CoA acetyltransferase 2; Belongs to the thiolase-like superfamily. Thiolase family.	0.557
ABCA5	DHCR7	ENSOGAP00000001103	ENSOGAP00000001111	ATP binding cassette subfamily A member 5.	7-dehydrocholesterol reductase.	0.575
ABCA5	ELP6	ENSOGAP00000001103	ENSOGAP00000002039	ATP binding cassette subfamily A member 5.	Elongator acetyltransferase complex subunit 6.	0.586
ABCA5	RPL19	ENSOGAP00000001103	ENSOGAP00000017321	ATP binding cassette subfamily A member 5.	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	0.632
ABCA5	TRAPPC1	ENSOGAP00000001103	ENSOGAP00000017959	ATP binding cassette subfamily A member 5.	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	0.605
ABCA5	TRIP12	ENSOGAP00000001103	ENSOGAP00000001982	ATP binding cassette subfamily A member 5.	Thyroid hormone receptor interactor 12.	0.804