MTERF1 protein (Otolemur garnettii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

MTERF1

Mitochondrial transcription termination factor 1. (397 aa)

Predicted Functional Partners:

FASTKD2

0.920

H0WMX1_OTOGA

0.757

YKT6

0.745

GOSR1

0.744

STX5

0.744

NFYB

0.662

FGFR3

0.662

TFB2M

0.638

MRPL36

0.634

TEFM

0.600

Your Current Organism:

Otolemur garnettii

NCBI taxonomy Id: 30611
Other names: Galago garnetti, Galago garnettii, O. garnettii, small-eared galago

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FASTKD2	H0WMX1_OTOGA	ENSOGAP00000015228	ENSOGAP00000003126	FAST kinase domains 2.	TruB_N domain-containing protein.	0.983
FASTKD2	MTERF1	ENSOGAP00000015228	ENSOGAP00000001225	FAST kinase domains 2.	Mitochondrial transcription termination factor 1.	0.920
FASTKD2	TFB2M	ENSOGAP00000015228	ENSOGAP00000007004	FAST kinase domains 2.	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	0.619
FGFR3	MTERF1	ENSOGAP00000021689	ENSOGAP00000001225	Fibroblast growth factor receptor.	Mitochondrial transcription termination factor 1.	0.662
GOSR1	MTERF1	ENSOGAP00000002709	ENSOGAP00000001225	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.	Mitochondrial transcription termination factor 1.	0.744
GOSR1	STX5	ENSOGAP00000002709	ENSOGAP00000013703	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.	Syntaxin 5; Belongs to the syntaxin family.	0.999
GOSR1	YKT6	ENSOGAP00000002709	ENSOGAP00000005771	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.	YKT6 v-SNARE homolog; Belongs to the synaptobrevin family.	0.996
H0WMX1_OTOGA	FASTKD2	ENSOGAP00000003126	ENSOGAP00000015228	TruB_N domain-containing protein.	FAST kinase domains 2.	0.983
H0WMX1_OTOGA	MTERF1	ENSOGAP00000003126	ENSOGAP00000001225	TruB_N domain-containing protein.	Mitochondrial transcription termination factor 1.	0.757
MRPL36	MTERF1	ENSOGAP00000021413	ENSOGAP00000001225	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Mitochondrial transcription termination factor 1.	0.634
MTERF1	FASTKD2	ENSOGAP00000001225	ENSOGAP00000015228	Mitochondrial transcription termination factor 1.	FAST kinase domains 2.	0.920
MTERF1	FGFR3	ENSOGAP00000001225	ENSOGAP00000021689	Mitochondrial transcription termination factor 1.	Fibroblast growth factor receptor.	0.662
MTERF1	GOSR1	ENSOGAP00000001225	ENSOGAP00000002709	Mitochondrial transcription termination factor 1.	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.	0.744
MTERF1	H0WMX1_OTOGA	ENSOGAP00000001225	ENSOGAP00000003126	Mitochondrial transcription termination factor 1.	TruB_N domain-containing protein.	0.757
MTERF1	MRPL36	ENSOGAP00000001225	ENSOGAP00000021413	Mitochondrial transcription termination factor 1.	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	0.634
MTERF1	NFYB	ENSOGAP00000001225	ENSOGAP00000005610	Mitochondrial transcription termination factor 1.	Nuclear transcription factor Y subunit beta.	0.662
MTERF1	STX5	ENSOGAP00000001225	ENSOGAP00000013703	Mitochondrial transcription termination factor 1.	Syntaxin 5; Belongs to the syntaxin family.	0.744
MTERF1	TEFM	ENSOGAP00000001225	ENSOGAP00000001064	Mitochondrial transcription termination factor 1.	Transcription elongation factor, mitochondrial.	0.600
MTERF1	TFB2M	ENSOGAP00000001225	ENSOGAP00000007004	Mitochondrial transcription termination factor 1.	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	0.638
MTERF1	YKT6	ENSOGAP00000001225	ENSOGAP00000005771	Mitochondrial transcription termination factor 1.	YKT6 v-SNARE homolog; Belongs to the synaptobrevin family.	0.745