Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VPS13CVacuolar protein sorting 13 homolog C. (3737 aa)    
Predicted Functional Partners:
VPS35
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
   
 
 0.918
NUDCD1
NudC domain containing 1.
    
   0.896
RIC3
RIC3 acetylcholine receptor chaperone.
      
 0.860
SYNJ1
Synaptojanin 1.
    
 
 0.833
FBXO7
F-box only protein 7 isoform 1 (Predicted).
      
 0.833
ATXN2
Ataxin 2.
      
 0.831
RING1
Ring finger protein 1.
      
 0.813
SPG11
SPG11 vesicle trafficking associated, spatacsin.
   
  
 0.798
DNAJC13
DnaJ heat shock protein family (Hsp40) member C13.
   
  
 0.789
LGALS12
Galectin.
    
 
 0.779
Your Current Organism:
Otolemur garnettii
NCBI taxonomy Id: 30611
Other names: Galago garnetti, Galago garnettii, O. garnettii, small-eared galago
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