TRMT44 protein (Otolemur garnettii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

TRMT44

tRNA methyltransferase 44 homolog. (720 aa)

Predicted Functional Partners:

PUS1

0.747

METTL1

0.651

THUMPD1

0.625

TRMT13

0.605

METTL21A

0.599

WDR6

0.593

TRMT6

0.592

WDR4

0.577

EEF1AKNMT

0.576

H0X3X2_OTOGA

0.539

Your Current Organism:

Otolemur garnettii

NCBI taxonomy Id: 30611
Other names: Galago garnetti, Galago garnettii, O. garnettii, small-eared galago

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EEF1AKNMT	H0X3X2_OTOGA	ENSOGAP00000010520	ENSOGAP00000009862	EEF1A lysine and N-terminal methyltransferase.	Methyltranfer_dom domain-containing protein.	0.545
EEF1AKNMT	METTL1	ENSOGAP00000010520	ENSOGAP00000012889	EEF1A lysine and N-terminal methyltransferase.	tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. TrmB family.	0.413
EEF1AKNMT	METTL21A	ENSOGAP00000010520	ENSOGAP00000020710	EEF1A lysine and N-terminal methyltransferase.	Methyltransferase like 21A.	0.515
EEF1AKNMT	TRMT44	ENSOGAP00000010520	ENSOGAP00000002007	EEF1A lysine and N-terminal methyltransferase.	tRNA methyltransferase 44 homolog.	0.576
H0X3X2_OTOGA	EEF1AKNMT	ENSOGAP00000009862	ENSOGAP00000010520	Methyltranfer_dom domain-containing protein.	EEF1A lysine and N-terminal methyltransferase.	0.545
H0X3X2_OTOGA	METTL1	ENSOGAP00000009862	ENSOGAP00000012889	Methyltranfer_dom domain-containing protein.	tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. TrmB family.	0.472
H0X3X2_OTOGA	METTL21A	ENSOGAP00000009862	ENSOGAP00000020710	Methyltranfer_dom domain-containing protein.	Methyltransferase like 21A.	0.530
H0X3X2_OTOGA	TRMT44	ENSOGAP00000009862	ENSOGAP00000002007	Methyltranfer_dom domain-containing protein.	tRNA methyltransferase 44 homolog.	0.539
METTL1	EEF1AKNMT	ENSOGAP00000012889	ENSOGAP00000010520	tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. TrmB family.	EEF1A lysine and N-terminal methyltransferase.	0.413
METTL1	H0X3X2_OTOGA	ENSOGAP00000012889	ENSOGAP00000009862	tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. TrmB family.	Methyltranfer_dom domain-containing protein.	0.472
METTL1	METTL21A	ENSOGAP00000012889	ENSOGAP00000020710	tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. TrmB family.	Methyltransferase like 21A.	0.404
METTL1	PUS1	ENSOGAP00000012889	ENSOGAP00000007817	tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. TrmB family.	Pseudouridine synthase 1.	0.804
METTL1	TRMT13	ENSOGAP00000012889	ENSOGAP00000005022	tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. TrmB family.	tRNA methyltransferase 13 homolog.	0.558
METTL1	TRMT44	ENSOGAP00000012889	ENSOGAP00000002007	tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. TrmB family.	tRNA methyltransferase 44 homolog.	0.651
METTL1	TRMT6	ENSOGAP00000012889	ENSOGAP00000011605	tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. TrmB family.	tRNA methyltransferase 6.	0.953
METTL1	WDR4	ENSOGAP00000012889	ENSOGAP00000003253	tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. TrmB family.	tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4; Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit. Belongs to the WD repeat TRM82 family.	0.999
METTL1	WDR6	ENSOGAP00000012889	ENSOGAP00000003501	tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. TrmB family.	WD repeat domain 6.	0.595
METTL21A	EEF1AKNMT	ENSOGAP00000020710	ENSOGAP00000010520	Methyltransferase like 21A.	EEF1A lysine and N-terminal methyltransferase.	0.515
METTL21A	H0X3X2_OTOGA	ENSOGAP00000020710	ENSOGAP00000009862	Methyltransferase like 21A.	Methyltranfer_dom domain-containing protein.	0.530
METTL21A	METTL1	ENSOGAP00000020710	ENSOGAP00000012889	Methyltransferase like 21A.	tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. TrmB family.	0.404