Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VPS9D1VPS9 domain containing 1. (651 aa)    
Predicted Functional Partners:
PDX1
Pancreatic and duodenal homeobox 1.
    
   0.872
NAV3
Neuron navigator 3.
    
   0.869
ASB3
Ankyrin repeat and SOCS box containing 3.
      
 0.712
PNO1
Partner of NOB1 homolog.
      
 0.681
POLR3A
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
      
 0.650
H0XMP5_OTOGA
Uncharacterized protein.
      
 0.639
ZNF276
Zinc finger protein 276.
      
 0.584
DND1
DND microRNA-mediated repression inhibitor 1.
      
 0.584
MNS1
Meiosis specific nuclear structural 1.
      
 0.578
ARRDC3
Arrestin domain containing 3.
      
 0.577
Your Current Organism:
Otolemur garnettii
NCBI taxonomy Id: 30611
Other names: Galago garnetti, Galago garnettii, O. garnettii, small-eared galago
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