NCBP2 protein (Otolemur garnettii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Otolemur garnettii

NCBI taxonomy Id: 30611
Other names: Galago garnetti, Galago garnettii, O. garnettii, small-eared galago

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H0WQ60_OTOGA	NCBP1	ENSOGAP00000004071	ENSOGAP00000012442	Uncharacterized protein.	Nuclear cap binding protein subunit 1.	0.984
H0WQ60_OTOGA	NCBP2	ENSOGAP00000004071	ENSOGAP00000004475	Uncharacterized protein.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	0.987
H0WQ60_OTOGA	SRRT	ENSOGAP00000004071	ENSOGAP00000015446	Uncharacterized protein.	Serrate, RNA effector molecule.	0.891
H0XLB8_OTOGA	NCBP1	ENSOGAP00000016908	ENSOGAP00000012442	RNA_GG_bind domain-containing protein.	Nuclear cap binding protein subunit 1.	0.984
H0XLB8_OTOGA	NCBP2	ENSOGAP00000016908	ENSOGAP00000004475	RNA_GG_bind domain-containing protein.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	0.987
H0XLB8_OTOGA	SRRT	ENSOGAP00000016908	ENSOGAP00000015446	RNA_GG_bind domain-containing protein.	Serrate, RNA effector molecule.	0.891
MTREX	NCBP1	ENSOGAP00000002585	ENSOGAP00000012442	Mtr4 exosome RNA helicase.	Nuclear cap binding protein subunit 1.	0.986
MTREX	NCBP2	ENSOGAP00000002585	ENSOGAP00000004475	Mtr4 exosome RNA helicase.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	0.985
MTREX	PABPN1	ENSOGAP00000002585	ENSOGAP00000007808	Mtr4 exosome RNA helicase.	RRM domain-containing protein.	0.932
MTREX	SRRT	ENSOGAP00000002585	ENSOGAP00000015446	Mtr4 exosome RNA helicase.	Serrate, RNA effector molecule.	0.993
MTREX	UPF1	ENSOGAP00000002585	ENSOGAP00000011534	Mtr4 exosome RNA helicase.	UPF1 RNA helicase and ATPase.	0.507
MTREX	ZC3H18	ENSOGAP00000002585	ENSOGAP00000000371	Mtr4 exosome RNA helicase.	Zinc finger CCCH-type containing 18.	0.736
NCBP1	H0WQ60_OTOGA	ENSOGAP00000012442	ENSOGAP00000004071	Nuclear cap binding protein subunit 1.	Uncharacterized protein.	0.984
NCBP1	H0XLB8_OTOGA	ENSOGAP00000012442	ENSOGAP00000016908	Nuclear cap binding protein subunit 1.	RNA_GG_bind domain-containing protein.	0.984
NCBP1	MTREX	ENSOGAP00000012442	ENSOGAP00000002585	Nuclear cap binding protein subunit 1.	Mtr4 exosome RNA helicase.	0.986
NCBP1	NCBP2	ENSOGAP00000012442	ENSOGAP00000004475	Nuclear cap binding protein subunit 1.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	0.999
NCBP1	NELFE	ENSOGAP00000012442	ENSOGAP00000008565	Nuclear cap binding protein subunit 1.	Negative elongation factor complex member E.	0.989
NCBP1	PABPN1	ENSOGAP00000012442	ENSOGAP00000007808	Nuclear cap binding protein subunit 1.	RRM domain-containing protein.	0.994
NCBP1	RBM8A	ENSOGAP00000012442	ENSOGAP00000000178	Nuclear cap binding protein subunit 1.	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.	0.879
NCBP1	SRRT	ENSOGAP00000012442	ENSOGAP00000015446	Nuclear cap binding protein subunit 1.	Serrate, RNA effector molecule.	0.997