SCAMP5 protein (Otolemur garnettii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

SCAMP5

Secretory carrier-associated membrane protein. (235 aa)

Predicted Functional Partners:

DNM3

0.796

DENND1A

0.795

SCAMP3

0.777

SYP

0.759

CLK3

0.669

SYT1

0.625

AP4E1

0.606

SYT11

0.605

SLC6A1

0.576

APBA2

0.567

Your Current Organism:

Otolemur garnettii

NCBI taxonomy Id: 30611
Other names: Galago garnetti, Galago garnettii, O. garnettii, small-eared galago

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AP4E1	DNM3	ENSOGAP00000017232	ENSOGAP00000010524	AP-4 complex subunit epsilon; Component of the adaptor protein complex 4 (AP-4). Adaptor protein complexes are vesicle coat components involved both in vesicle formation and cargo selection. They control the vesicular transport of proteins in different trafficking pathways. AP-4 forms a non clathrin- associated coat on vesicles departing the trans-Golgi network (TGN) and may be involved in the targeting of proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system.	Dynamin 3; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.574
AP4E1	SCAMP5	ENSOGAP00000017232	ENSOGAP00000005019	AP-4 complex subunit epsilon; Component of the adaptor protein complex 4 (AP-4). Adaptor protein complexes are vesicle coat components involved both in vesicle formation and cargo selection. They control the vesicular transport of proteins in different trafficking pathways. AP-4 forms a non clathrin- associated coat on vesicles departing the trans-Golgi network (TGN) and may be involved in the targeting of proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system.	Secretory carrier-associated membrane protein.	0.606
APBA2	SCAMP5	ENSOGAP00000014292	ENSOGAP00000005019	Amyloid beta precursor protein binding family A member 2.	Secretory carrier-associated membrane protein.	0.567
APBA2	SYT1	ENSOGAP00000014292	ENSOGAP00000008889	Amyloid beta precursor protein binding family A member 2.	Synaptotagmin 1.	0.549
CLK3	SCAMP5	ENSOGAP00000012938	ENSOGAP00000005019	CDC like kinase 3.	Secretory carrier-associated membrane protein.	0.669
DENND1A	DNM3	ENSOGAP00000012407	ENSOGAP00000010524	DENN domain containing 1A.	Dynamin 3; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.514
DENND1A	SCAMP5	ENSOGAP00000012407	ENSOGAP00000005019	DENN domain containing 1A.	Secretory carrier-associated membrane protein.	0.795
DENND1A	SYT11	ENSOGAP00000012407	ENSOGAP00000002016	DENN domain containing 1A.	Synaptotagmin 11.	0.555
DNM3	AP4E1	ENSOGAP00000010524	ENSOGAP00000017232	Dynamin 3; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	AP-4 complex subunit epsilon; Component of the adaptor protein complex 4 (AP-4). Adaptor protein complexes are vesicle coat components involved both in vesicle formation and cargo selection. They control the vesicular transport of proteins in different trafficking pathways. AP-4 forms a non clathrin- associated coat on vesicles departing the trans-Golgi network (TGN) and may be involved in the targeting of proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system.	0.574
DNM3	DENND1A	ENSOGAP00000010524	ENSOGAP00000012407	Dynamin 3; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	DENN domain containing 1A.	0.514
DNM3	SCAMP5	ENSOGAP00000010524	ENSOGAP00000005019	Dynamin 3; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	Secretory carrier-associated membrane protein.	0.796
DNM3	SYT11	ENSOGAP00000010524	ENSOGAP00000002016	Dynamin 3; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	Synaptotagmin 11.	0.478
SCAMP3	SCAMP5	ENSOGAP00000008573	ENSOGAP00000005019	Secretory carrier-associated membrane protein.	Secretory carrier-associated membrane protein.	0.777
SCAMP5	AP4E1	ENSOGAP00000005019	ENSOGAP00000017232	Secretory carrier-associated membrane protein.	AP-4 complex subunit epsilon; Component of the adaptor protein complex 4 (AP-4). Adaptor protein complexes are vesicle coat components involved both in vesicle formation and cargo selection. They control the vesicular transport of proteins in different trafficking pathways. AP-4 forms a non clathrin- associated coat on vesicles departing the trans-Golgi network (TGN) and may be involved in the targeting of proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system.	0.606
SCAMP5	APBA2	ENSOGAP00000005019	ENSOGAP00000014292	Secretory carrier-associated membrane protein.	Amyloid beta precursor protein binding family A member 2.	0.567
SCAMP5	CLK3	ENSOGAP00000005019	ENSOGAP00000012938	Secretory carrier-associated membrane protein.	CDC like kinase 3.	0.669
SCAMP5	DENND1A	ENSOGAP00000005019	ENSOGAP00000012407	Secretory carrier-associated membrane protein.	DENN domain containing 1A.	0.795
SCAMP5	DNM3	ENSOGAP00000005019	ENSOGAP00000010524	Secretory carrier-associated membrane protein.	Dynamin 3; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.796
SCAMP5	SCAMP3	ENSOGAP00000005019	ENSOGAP00000008573	Secretory carrier-associated membrane protein.	Secretory carrier-associated membrane protein.	0.777
SCAMP5	SLC6A1	ENSOGAP00000005019	ENSOGAP00000011693	Secretory carrier-associated membrane protein.	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.	0.576