PABPN1 protein (Otolemur garnettii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Otolemur garnettii

NCBI taxonomy Id: 30611
Other names: Galago garnetti, Galago garnettii, O. garnettii, small-eared galago

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DHX38	NCBP1	ENSOGAP00000007771	ENSOGAP00000012442	DEAH-box helicase 38.	Nuclear cap binding protein subunit 1.	0.970
DHX38	NCBP2	ENSOGAP00000007771	ENSOGAP00000004475	DEAH-box helicase 38.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	0.968
DHX38	PABPN1	ENSOGAP00000007771	ENSOGAP00000007808	DEAH-box helicase 38.	RRM domain-containing protein.	0.945
DHX38	SRSF1	ENSOGAP00000007771	ENSOGAP00000020655	DEAH-box helicase 38.	Uncharacterized protein.	0.949
DHX38	SRSF5	ENSOGAP00000007771	ENSOGAP00000013544	DEAH-box helicase 38.	Serine and arginine rich splicing factor 5.	0.953
DHX38	SRSF9	ENSOGAP00000007771	ENSOGAP00000003426	DEAH-box helicase 38.	Serine and arginine rich splicing factor 9.	0.947
DHX9	NCBP1	ENSOGAP00000002347	ENSOGAP00000012442	DExH-box helicase 9.	Nuclear cap binding protein subunit 1.	0.847
DHX9	NCBP2	ENSOGAP00000002347	ENSOGAP00000004475	DExH-box helicase 9.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	0.480
DHX9	PABPN1	ENSOGAP00000002347	ENSOGAP00000007808	DExH-box helicase 9.	RRM domain-containing protein.	0.965
DHX9	SRSF1	ENSOGAP00000002347	ENSOGAP00000020655	DExH-box helicase 9.	Uncharacterized protein.	0.918
DHX9	SRSF5	ENSOGAP00000002347	ENSOGAP00000013544	DExH-box helicase 9.	Serine and arginine rich splicing factor 5.	0.682
DHX9	SRSF9	ENSOGAP00000002347	ENSOGAP00000003426	DExH-box helicase 9.	Serine and arginine rich splicing factor 9.	0.723
H0X4P8_OTOGA	NCBP1	ENSOGAP00000010192	ENSOGAP00000012442	Uncharacterized protein.	Nuclear cap binding protein subunit 1.	0.560
H0X4P8_OTOGA	NCBP2	ENSOGAP00000010192	ENSOGAP00000004475	Uncharacterized protein.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	0.517
H0X4P8_OTOGA	PABPN1	ENSOGAP00000010192	ENSOGAP00000007808	Uncharacterized protein.	RRM domain-containing protein.	0.933
H0X4P8_OTOGA	SAP18	ENSOGAP00000010192	ENSOGAP00000008989	Uncharacterized protein.	Histone deacetylase complex subunit SAP18; Component of the SIN3-repressing complex. Enhances the ability of SIN3-HDAC1-mediated transcriptional repression. When tethered to the promoter, it can direct the formation of a repressive complex to core histone proteins. Auxiliary component of the splicing- dependent multiprotein exon junction complex (EJC) deposited at splice junction on mRNAs. The EJC is a dynamic structure consisting of core proteins and several peripheral nuclear and cytoplasmic associated factors that join the complex only transiently either during EJC assembly or durin [...]	0.998
H0X4P8_OTOGA	SRSF1	ENSOGAP00000010192	ENSOGAP00000020655	Uncharacterized protein.	Uncharacterized protein.	0.424
H0X4P8_OTOGA	SRSF5	ENSOGAP00000010192	ENSOGAP00000013544	Uncharacterized protein.	Serine and arginine rich splicing factor 5.	0.401
NCBP1	DHX38	ENSOGAP00000012442	ENSOGAP00000007771	Nuclear cap binding protein subunit 1.	DEAH-box helicase 38.	0.970
NCBP1	DHX9	ENSOGAP00000012442	ENSOGAP00000002347	Nuclear cap binding protein subunit 1.	DExH-box helicase 9.	0.847