Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LDB1LIM domain binding 1. (356 aa)    
Predicted Functional Partners:
LMO2
LIM domain only 2.
    
 0.994
TAL1
TAL bHLH transcription factor 1, erythroid differentiation factor.
    
 0.994
ISL1
ISL LIM homeobox 1.
    
 0.992
LHX6
LIM homeobox 6.
    
 0.981
ISL2
ISL LIM homeobox 2.
    
 0.980
SSBP2
Single stranded DNA binding protein 2.
    
 
 0.979
LMX1B
LIM homeobox transcription factor 1 beta.
    
 0.977
LHX9
LIM homeobox 9.
    
 0.977
LMO4
LIM domain only 4.
   
 0.975
LHX4
LIM homeobox 4.
    
 0.974
Your Current Organism:
Otolemur garnettii
NCBI taxonomy Id: 30611
Other names: Galago garnetti, Galago garnettii, O. garnettii, small-eared galago
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