LOC100960876 protein (Otolemur garnettii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC100960876

Uncharacterized protein. (183 aa)

Predicted Functional Partners:

PCGF6

0.886

L3MBTL2

0.875

EHMT2

0.856

H0XJN8_OTOGA

0.856

SUV39H1

0.850

EHMT1

0.825

SUV39H2

0.823

E2F6

0.816

H0Y0Y6_OTOGA

0.816

MBTD1

0.780

Your Current Organism:

Otolemur garnettii

NCBI taxonomy Id: 30611
Other names: Galago garnetti, Galago garnettii, O. garnettii, small-eared galago

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
E2F6	EHMT1	ENSOGAP00000012187	ENSOGAP00000000118	E2F transcription factor 6.	Euchromatic histone lysine methyltransferase 1.	0.710
E2F6	EHMT2	ENSOGAP00000012187	ENSOGAP00000012706	E2F transcription factor 6.	Uncharacterized protein.	0.672
E2F6	H0XJN8_OTOGA	ENSOGAP00000012187	ENSOGAP00000016328	E2F transcription factor 6.	SET domain-containing protein.	0.672
E2F6	L3MBTL2	ENSOGAP00000012187	ENSOGAP00000000385	E2F transcription factor 6.	L3MBTL histone methyl-lysine binding protein 2.	0.923
E2F6	LOC100960876	ENSOGAP00000012187	ENSOGAP00000016528	E2F transcription factor 6.	Uncharacterized protein.	0.816
E2F6	MBTD1	ENSOGAP00000012187	ENSOGAP00000000365	E2F transcription factor 6.	Mbt domain containing 1.	0.891
E2F6	PCGF6	ENSOGAP00000012187	ENSOGAP00000015312	E2F transcription factor 6.	Polycomb group ring finger 6.	0.933
E2F6	SUV39H1	ENSOGAP00000012187	ENSOGAP00000017526	E2F transcription factor 6.	Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. Suvar3-9 subfamily.	0.478
E2F6	SUV39H2	ENSOGAP00000012187	ENSOGAP00000018094	E2F transcription factor 6.	Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. Suvar3-9 subfamily.	0.478
EHMT1	E2F6	ENSOGAP00000000118	ENSOGAP00000012187	Euchromatic histone lysine methyltransferase 1.	E2F transcription factor 6.	0.710
EHMT1	EHMT2	ENSOGAP00000000118	ENSOGAP00000012706	Euchromatic histone lysine methyltransferase 1.	Uncharacterized protein.	0.965
EHMT1	H0XJN8_OTOGA	ENSOGAP00000000118	ENSOGAP00000016328	Euchromatic histone lysine methyltransferase 1.	SET domain-containing protein.	0.964
EHMT1	H0Y0Y6_OTOGA	ENSOGAP00000000118	ENSOGAP00000022029	Euchromatic histone lysine methyltransferase 1.	E2F_TDP domain-containing protein.	0.710
EHMT1	L3MBTL2	ENSOGAP00000000118	ENSOGAP00000000385	Euchromatic histone lysine methyltransferase 1.	L3MBTL histone methyl-lysine binding protein 2.	0.705
EHMT1	LOC100960876	ENSOGAP00000000118	ENSOGAP00000016528	Euchromatic histone lysine methyltransferase 1.	Uncharacterized protein.	0.825
EHMT1	MBTD1	ENSOGAP00000000118	ENSOGAP00000000365	Euchromatic histone lysine methyltransferase 1.	Mbt domain containing 1.	0.675
EHMT1	PCGF6	ENSOGAP00000000118	ENSOGAP00000015312	Euchromatic histone lysine methyltransferase 1.	Polycomb group ring finger 6.	0.655
EHMT1	SUV39H1	ENSOGAP00000000118	ENSOGAP00000017526	Euchromatic histone lysine methyltransferase 1.	Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. Suvar3-9 subfamily.	0.741
EHMT1	SUV39H2	ENSOGAP00000000118	ENSOGAP00000018094	Euchromatic histone lysine methyltransferase 1.	Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. Suvar3-9 subfamily.	0.744
EHMT2	E2F6	ENSOGAP00000012706	ENSOGAP00000012187	Uncharacterized protein.	E2F transcription factor 6.	0.672