STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRIM28Tripartite motif containing 28. (806 aa)    
Predicted Functional Partners:
SMARCAD1
Uncharacterized protein.
   
 
 0.961
H0XVZ2_OTOGA
Uncharacterized protein.
    
 0.956
CBX5
Chromobox 5.
    
 0.954
CBX1
Chromobox 1.
    
 0.937
SMAD4
Mothers against decapentaplegic homolog.
   
 0.897
ZNF274
Zinc finger protein 274.
    
 0.896
ZNF350
Zinc finger protein 350.
    
 0.891
TRIM24
Tripartite motif containing 24.
    
 
0.855
ZNF354C
Zinc finger protein 354C.
    
 0.849
CHD3
Chromodomain helicase DNA binding protein 3.
    
 
0.848
Your Current Organism:
Otolemur garnettii
NCBI taxonomy Id: 30611
Other names: Galago garnetti, Galago garnettii, O. garnettii, small-eared galago
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.