STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cla_0022Conserved hypothetical protein; Pfam match to PF04055.12 Radical_SAM. (336 aa)    
Predicted Functional Partners:
moaC
Molybdenum cofactor biosynthesis protein C; Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP); Belongs to the MoaC family.
  
  
 0.803
moaD
Molybdopterin converting factor, subunit 1; Pfam match to PF02597.11 ThiS.
  
  
 0.632
rlmN
Conserved hypothetical protein, radical SAM enzyme (Cfr family); Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family.
     
 0.595
Cla_0020
Conserved hypothetical protein, putative purine nucleoside phosphorylase.
  
    0.540
Cla_0387
Conserved hypothetical protein, putative HAD superfamily hydrolase; Pfam match to PF00702.17 Hydrolase.
  
    0.540
Cla_0774
Conserved hypothetical protein, putative HAD superfamily hydrolase; Pfam match to PF00702.17 Hydrolase.
  
    0.540
hisB
Imidazoleglycerol-phosphate dehydratase/histidinol-phosphatase; Pfam matches to PF08645.2 PNK3P, and to PF00475.9 IGPD; In the N-terminal section; belongs to the histidinol- phosphatase family.
     
 0.460
ksgA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
  
    0.435
cgb
Conserved hypothetical protein, putative flavohemoprotein; Pfam match to PF00042.13 Globin; Belongs to the globin family.
   
  
 0.420
ribD
Riboflavin biosynthesis protein; Pfam match to PF00383.13 dCMP_cyt_deam_1.
     
 0.413
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
Server load: medium (70%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.