STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cla_0032Conserved hypothetical protein, putative VWA domain protein. (474 aa)    
Predicted Functional Partners:
Cla_0033
Conserved hypothetical protein, putative MoxR/RavA-like ATPase; Pfam matches to PF07728.5 AAA_5, and to PF03382.5 DUF285.
 
  
 0.937
Cla_0031
Conserved hypothetical protein, putative transcriptional regulator; Pfam match to PF08279.3 HTH_11.
       0.559
rpmI
Pfam match to PF01632.10 Ribosomal_L35p; Belongs to the bacterial ribosomal protein bL35 family.
       0.453
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.