STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cla_0033Conserved hypothetical protein, putative MoxR/RavA-like ATPase; Pfam matches to PF07728.5 AAA_5, and to PF03382.5 DUF285. (560 aa)    
Predicted Functional Partners:
Cla_0032
Conserved hypothetical protein, putative VWA domain protein.
 
  
 0.945
mez
Malate oxidoreductase; Pfam matches to PF00390.10 malic, and to PF03949.6 Malic_M.
   
    0.552
rpmI
Pfam match to PF01632.10 Ribosomal_L35p; Belongs to the bacterial ribosomal protein bL35 family.
       0.511
Cla_0031
Conserved hypothetical protein, putative transcriptional regulator; Pfam match to PF08279.3 HTH_11.
  
    0.500
Cla_0420
TPR-domain containing protein; Pfam matches to PF00515.19 TPR_1, and to PF00515.19 TPR_1.
     
 0.490
por
Pyruvate ferredoxin/flavodoxin oxidoreductase; Pfam matches to PF01855.10 POR_N, and to PF01558.9 POR.
     
 0.405
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.