Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
znuBCation ABC transporter, permease protein; Pfam match to PF00950.8 ABC-3. (269 aa)    
Predicted Functional Partners:
znuC
Cation ABC transporter, ATP-binding protein; Pfam match to PF00005.18 ABC_tran.
 
 0.999
znuA
Cation ABC transporter, periplasmic cation-binding protein; Pfam match to PF01297.8 SBP_bac_9.
 
 
 0.998
Cla_0040
Conserved hypothetical protein.
       0.658
Cla_0751
ABC transporter, ATP-binding protein; Pfam match to PF00005.18 ABC_tran.
     
 0.426
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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