STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cla_0040Conserved hypothetical protein. (232 aa)    
Predicted Functional Partners:
znuB
Cation ABC transporter, permease protein; Pfam match to PF00950.8 ABC-3.
       0.658
znuC
Cation ABC transporter, ATP-binding protein; Pfam match to PF00005.18 ABC_tran.
       0.658
znuA
Cation ABC transporter, periplasmic cation-binding protein; Pfam match to PF01297.8 SBP_bac_9.
       0.654
tonB2
TonB domain protein; Pfam match to PF03544.5 TonB.
  
    0.538
dsbI
Disulfide bond formation protein, DsbB family; Pfam match to PF02600.7 DsbB.
  
    0.503
Cla_0051
Putative C4-dicarboxylate transporter; Pfam match to PF03606.6 DcuC.
  
     0.456
Cla_0278
Anaerobic C4-dicarboxylate transporter, putative; Pfam match to PF03606.6 DcuC.
  
     0.438
Cla_0114
Conserved hypothetical protein.
  
     0.427
Cla_1325
Conserved hypothetical protein, possible N-acetyltransferase PseH; Pfam match to PF00583.15 Acetyltransf_1.
  
     0.417
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.