STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
eptCConserved hypothetical protein, putative sulfatase; Pfam matches to PF08019.3 DUF1705, and to PF00884.14 Sulfatase. (510 aa)    
Predicted Functional Partners:
dgkA
Diacylglycerol kinase; Recycling of diacylglycerol produced during the turnover of membrane phospholipid.
 
   
 0.861
pyrC1
Dihydroorotase; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate.
 
     0.845
Cla_0042
Conserved hypothetical protein.
       0.825
kpsT
Capsular polysaccharide ABC transporter, ATP-binding protein; Pfam match to PF00005.18 ABC_tran.
      
 0.686
waaE
D,D-heptose 1-phosphate adenosyltransferase/7-phosphate kinase; Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno-heptose. In the N-terminal section; belongs to the carbohydrate kinase PfkB family.
      
 0.658
kpsS
Capsular polysaccharide export protein KpsS; Pfam match to PF05159.5 Capsule_synth.
      
 0.652
gmhA
Phosphoheptose isomerase; Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate.
      
 0.652
xth
Exodeoxyribonuclease III; Pfam match to PF03372.14 Exo_endo_phos.
       0.651
htrB
Putative lipid A biosynthesis lauroyl acyltransferase; Pfam match to PF03279.4 Lip_A_acyltrans.
      
 0.630
waaC
Lipopolysaccharide heptosyltransferase I; Pfam match to PF01075.8 Glyco_transf_9.
     
 0.624
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.