STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbrRubrerythrin; Pfam matches to PF06397.3 Desulfoferrod_N, and to PF02915.8 Rubrerythrin. (215 aa)    
Predicted Functional Partners:
cprR
Two-component response regulator; Pfam matches to PF00072.15 Response_reg, and to PF00486.19 Trans_reg_C.
      
 0.814
ahpC
Alkyl hydroperoxide reductase C22 protein, AhpC/TsaA family; Pfam match to PF00578.12 AhpC-TSA.
  
  
 0.802
cprS
Two-component sensor histidine kinase; Pfam matches to PF00672.16 HAMP, and to PF00512.16 HisKA.
  
   
 0.628
mug
Conserved hypothetical protein.
       0.625
rnhB
Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
       0.622
ansA
L-asparaginase; Pfam match to PF00710.11 Asparaginase.
       0.621
sodC
Superoxide dismutase (Cu/Zn); Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family.
      
 0.620
perR
Peroxide stress regulator; Pfam match to PF01475.10 FUR; Belongs to the Fur family.
  
  
 0.567
rpoN
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
      
 0.519
lepP
Pfam match to PF00717.14 Peptidase_S24; Belongs to the peptidase S26 family.
      
 0.516
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.