STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cla_0087MCP-domain signal transduction protein; Pfam match to PF00015.12 MCPsignal. (600 aa)    
Predicted Functional Partners:
cheA
Chemotaxis protein CheA; Pfam matches to PF01627.14 Hpt, and to PF02895.5 H-kinase_dim.
 
 0.998
cheV
Chemotaxis protein CheV; Pfam matches to PF01584.10 CheW, and to PF00072.15 Response_reg.
 
 0.998
cheW
Chemotaxis protein CheW; Pfam match to PF01584.10 CheW.
  
 0.988
cheR
Chemotaxis protein methyltransferase; Pfam match to PF01739.9 CheR.
  
 0.983
cheB
Protein-glutamate methylesterase; Pfam match to PF01339.8 CheB_methylest.
  
 0.981
cheY
Chemotaxis protein CheY; Pfam match to PF00072.15 Response_reg.
  
  0.937
putP
Sodium/proline symporter; Catalyzes the sodium-dependent uptake of extracellular L- proline; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
      
 0.820
Cla_0457
Sodium/proline symporter; Catalyzes the sodium-dependent uptake of extracellular L- proline; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
      
 0.813
Cla_0088
Cytochrome c551 peroxidase; Pfam match to PF03150.5 CCP_MauG.
  
    0.785
dnaG
DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.
   
  
 0.606
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.