Cla_0089 protein (Campylobacter lari) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Cla_0089

Conserved hypothetical protein, probable MFS transporter; Pfam match to PF07690.7 MFS_1. (429 aa)

Predicted Functional Partners:

Cla_0088

0.620

Cla_0087

0.603

rpmE

0.569

infA

0.551

ribE

0.540

Your Current Organism:

Campylobacter lari

NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Cla_0087	Cla_0088	Cla_0087	Cla_0088	MCP-domain signal transduction protein; Pfam match to PF00015.12 MCPsignal.	Cytochrome c551 peroxidase; Pfam match to PF03150.5 CCP_MauG.	0.785
Cla_0087	Cla_0089	Cla_0087	Cla_0089	MCP-domain signal transduction protein; Pfam match to PF00015.12 MCPsignal.	Conserved hypothetical protein, probable MFS transporter; Pfam match to PF07690.7 MFS_1.	0.603
Cla_0087	infA	Cla_0087	Cla_0090	MCP-domain signal transduction protein; Pfam match to PF00015.12 MCPsignal.	Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.	0.425
Cla_0088	Cla_0087	Cla_0088	Cla_0087	Cytochrome c551 peroxidase; Pfam match to PF03150.5 CCP_MauG.	MCP-domain signal transduction protein; Pfam match to PF00015.12 MCPsignal.	0.785
Cla_0088	Cla_0089	Cla_0088	Cla_0089	Cytochrome c551 peroxidase; Pfam match to PF03150.5 CCP_MauG.	Conserved hypothetical protein, probable MFS transporter; Pfam match to PF07690.7 MFS_1.	0.620
Cla_0088	infA	Cla_0088	Cla_0090	Cytochrome c551 peroxidase; Pfam match to PF03150.5 CCP_MauG.	Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.	0.425
Cla_0089	Cla_0087	Cla_0089	Cla_0087	Conserved hypothetical protein, probable MFS transporter; Pfam match to PF07690.7 MFS_1.	MCP-domain signal transduction protein; Pfam match to PF00015.12 MCPsignal.	0.603
Cla_0089	Cla_0088	Cla_0089	Cla_0088	Conserved hypothetical protein, probable MFS transporter; Pfam match to PF07690.7 MFS_1.	Cytochrome c551 peroxidase; Pfam match to PF03150.5 CCP_MauG.	0.620
Cla_0089	infA	Cla_0089	Cla_0090	Conserved hypothetical protein, probable MFS transporter; Pfam match to PF07690.7 MFS_1.	Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.	0.551
Cla_0089	ribE	Cla_0089	Cla_1099	Conserved hypothetical protein, probable MFS transporter; Pfam match to PF07690.7 MFS_1.	Riboflavin synthase, alpha subunit; Pfam match to PF00677.8 Lum_binding.	0.540
Cla_0089	rpmE	Cla_0089	Cla_1420	Conserved hypothetical protein, probable MFS transporter; Pfam match to PF07690.7 MFS_1.	50S ribosomal protein L31; Binds the 23S rRNA.	0.569
infA	Cla_0087	Cla_0090	Cla_0087	Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.	MCP-domain signal transduction protein; Pfam match to PF00015.12 MCPsignal.	0.425
infA	Cla_0088	Cla_0090	Cla_0088	Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.	Cytochrome c551 peroxidase; Pfam match to PF03150.5 CCP_MauG.	0.425
infA	Cla_0089	Cla_0090	Cla_0089	Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.	Conserved hypothetical protein, probable MFS transporter; Pfam match to PF07690.7 MFS_1.	0.551
infA	rpmE	Cla_0090	Cla_1420	Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.	50S ribosomal protein L31; Binds the 23S rRNA.	0.554
ribE	Cla_0089	Cla_1099	Cla_0089	Riboflavin synthase, alpha subunit; Pfam match to PF00677.8 Lum_binding.	Conserved hypothetical protein, probable MFS transporter; Pfam match to PF07690.7 MFS_1.	0.540
ribE	rpmE	Cla_1099	Cla_1420	Riboflavin synthase, alpha subunit; Pfam match to PF00677.8 Lum_binding.	50S ribosomal protein L31; Binds the 23S rRNA.	0.675
rpmE	Cla_0089	Cla_1420	Cla_0089	50S ribosomal protein L31; Binds the 23S rRNA.	Conserved hypothetical protein, probable MFS transporter; Pfam match to PF07690.7 MFS_1.	0.569
rpmE	infA	Cla_1420	Cla_0090	50S ribosomal protein L31; Binds the 23S rRNA.	Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.	0.554
rpmE	ribE	Cla_1420	Cla_1099	50S ribosomal protein L31; Binds the 23S rRNA.	Riboflavin synthase, alpha subunit; Pfam match to PF00677.8 Lum_binding.	0.675