STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cla_0119Putative ABC transporter, periplasmic substrate-binding protein; Pfam match to PF02470.11 MCE. (275 aa)    
Predicted Functional Partners:
iamB
Putative ABC transporter, permease protein (DUF140 domain protein); Pfam match to PF02405.7 DUF140.
 
 0.999
iamA
Putative ABC transporter, ATP-binding protein; Pfam match to PF00005.18 ABC_tran.
 
 0.998
Cla_1280
Conserved hypothetical protein, putative organic solvent tolerance protein; Pfam match to PF05494.3 Tol_Tol_Ttg2.
  
 0.947
Cla_0120
Conserved hypothetical lipoprotein.
 
   0.945
Cla_0113
Conserved hypothetical protein (DUF149 domain protein); Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.
 
    0.848
motB
Flagellar motor component MotB; Pfam match to PF00691.11 OmpA.
 
 
   0.838
Cla_0110
Conserved hypothetical protein, NifU family protein; Pfam match to PF01106.8 NifU.
       0.825
Cla_0111
Conserved hypothetical protein.
       0.825
murE
UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily.
       0.825
Cla_0114
Conserved hypothetical protein.
       0.825
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.