STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
Cla_0139Anaerobic C4-dicarboxylate transporter; Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane; Belongs to the DcuA/DcuB transporter (TC 2.A.13.1) family. (444 aa)    
Predicted Functional Partners:
aspA
Aspartate ammonia-lyase; Pfam match to PF00206.11 Lyase_1.
  
  
 0.895
mcrB
Conserved hypothetical protein, putative ATPase, AAA family; Pfam match to PF07728.5 AAA_5.
      
 0.810
Cla_1378
Putative C4-dicarboxylate transporter; Pfam match to PF03606.6 DcuC.
  
   
 0.709
Cla_0051
Putative C4-dicarboxylate transporter; Pfam match to PF03606.6 DcuC.
  
   
 0.669
Cla_0278
Anaerobic C4-dicarboxylate transporter, putative; Pfam match to PF03606.6 DcuC.
  
   
 0.665
Cla_0610
Fibronectin type III domain protein; Pfam matches to PF00041.12 fn3, and to PF00041.12 fn3.
      
 0.631
Cla_0806
Cytochrome c family protein; Respiratory sulfite reductase that catalyzes the reduction of sulfite to sulfide in a single step, consuming six electrons in the process; Belongs to the multiheme cytochrome c family.
  
     0.580
ktrA
TRK system potassium uptake protein TrkA, putative; Pfam match to PF02254.9 TrkA_N.
       0.563
ktrB
TRK system potassium uptake protein TrkB, putative; Pfam match to PF02386.7 TrkH.
       0.563
fliH
Flagellar biosynthesis protein FliH; Pfam match to PF02108.7 FliH.
      
 0.563
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.