Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cla_0170Conserved hypothetical protein. (140 aa)    
Predicted Functional Partners:
fliN
Flagellar motor switch protein FliN; Pfam match to PF01052.11 SpoA.
       0.825
Cla_0172
Conserved hypothetical integral membrane protein.
       0.825
pseI
N-acetylneuraminic acid synthetase; Pfam matches to PF03102.5 NeuB, and to PF08666.3 SAF.
       0.635
maf6
Motility accessory factor; Pfam match to PF01973.9 DUF115.
       0.541
maf3
Motility accessory factor; Pfam match to PF01973.9 DUF115.
       0.517
maf4
Motility accessory factor; Pfam match to PF01973.9 DUF115.
       0.517
maf5
Motility accessory factor; Pfam match to PF01973.9 DUF115.
       0.517
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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