Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cla_0179Conserved hypothetical lipoprotein. (448 aa)    
Predicted Functional Partners:
Cla_0180
Conserved hypothetical lipoprotein.
 
   
 0.954
Cla_0182
Conserved hypothetical protein.
 
   
 0.909
Cla_0181
Conserved hypothetical protein.
       0.730
Cla_0114
Conserved hypothetical protein.
  
     0.694
dsbI
Disulfide bond formation protein, DsbB family; Pfam match to PF02600.7 DsbB.
  
     0.638
Cla_0912
Conserved hypothetical protein.
  
     0.612
Cla_0819
Conserved hypothetical protein.
  
     0.600
ccpA
Cytochrome c551 peroxidase; Pfam match to PF03150.5 CCP_MauG.
       0.535
Cla_0337
Conserved hypothetical protein, predicted ATP/GTP-binding protein.
  
     0.527
Cla_0255
Conserved hypothetical integral membrane protein.
  
     0.526
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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