STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cla_0180Conserved hypothetical lipoprotein. (209 aa)    
Predicted Functional Partners:
Cla_0179
Conserved hypothetical lipoprotein.
 
  
 0.950
Cla_0182
Conserved hypothetical protein.
 
  
 0.923
Cla_0181
Conserved hypothetical protein.
  
    0.810
pbpA
Penicillin-binding protein 1A; Pfam matches to PF00912.13 Transgly, and to PF00905.13 Transpeptidase.
    
 
 0.693
ccpA
Cytochrome c551 peroxidase; Pfam match to PF03150.5 CCP_MauG.
       0.503
rplU
50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
       0.446
rpmA
Pfam match to PF01016.10 Ribosomal_L27; Belongs to the bacterial ribosomal protein bL27 family.
       0.438
Cla_0114
Conserved hypothetical protein.
  
     0.432
plsY
Conserved hypothetical protein (DUF205 domain protein); Catalyzes the transfer of an acyl group from acyl-phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP.
 
     0.427
fliY
Flagellar motor switch protein FliY; Pfam match to PF01052.11 SpoA.
    
   0.406
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.