Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cla_0181Conserved hypothetical protein. (447 aa)    
Predicted Functional Partners:
Cla_0182
Conserved hypothetical protein.
       0.816
Cla_0180
Conserved hypothetical lipoprotein.
       0.758
Cla_0179
Conserved hypothetical lipoprotein.
       0.730
rplU
50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
       0.588
rpmA
Pfam match to PF01016.10 Ribosomal_L27; Belongs to the bacterial ribosomal protein bL27 family.
       0.579
fliL
Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
    
   0.512
fliG
Flagellar motor switch protein FliG; Pfam match to PF01706.7 FliG_C.
    
   0.512
ccpA
Cytochrome c551 peroxidase; Pfam match to PF03150.5 CCP_MauG.
       0.457
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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