STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tonB1TonB domain protein. (259 aa)    
Predicted Functional Partners:
exbD1
TonB system transport protein ExbD; Pfam match to PF02472.7 ExbD.
  
 
 0.964
exbB1
TonB system transport protein ExbB; Pfam match to PF01618.7 MotA_ExbB.
  
 
 0.937
exbD2
TonB system transport protein ExbD; Pfam match to PF02472.7 ExbD.
  
 
 0.923
tolB
Translocation protein TolB precursor; Pfam match to PF04052.4 TolB_N.
   
 
 0.895
exbB2
TonB system transport protein ExbB; Pfam match to PF01618.7 MotA_ExbB.
  
 
 0.865
atpD
ATP synthase F1 sector, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family.
     
 0.806
atpC
ATP synthase F1 sector, epsilon subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane.
       0.804
atpG
ATP synthase F1 sector, gamma subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.
       0.775
atpA
ATP synthase F1 sector, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family.
       0.767
atpF-2
ATP synthase F0 sector, B subunit; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.
       0.759
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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