STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tonB1TonB domain protein. (259 aa)    
Predicted Functional Partners:
exbD1
TonB system transport protein ExbD; Pfam match to PF02472.7 ExbD.
  
 
 0.959
exbB1
TonB system transport protein ExbB; Pfam match to PF01618.7 MotA_ExbB.
  
 
 0.943
exbD2
TonB system transport protein ExbD; Pfam match to PF02472.7 ExbD.
  
 
 0.917
tolB
Translocation protein TolB precursor; Pfam match to PF04052.4 TolB_N.
   
 
 0.906
exbB2
TonB system transport protein ExbB; Pfam match to PF01618.7 MotA_ExbB.
  
 
 0.893
atpD
ATP synthase F1 sector, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family.
       0.825
atpC
ATP synthase F1 sector, epsilon subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane.
       0.825
atpG
ATP synthase F1 sector, gamma subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.
       0.797
cfrA
Iron-regulated outer membrane virulence protein, TonB receptor CfrA; Pfam matches to PF07715.6 Plug, and to PF00593.15 TonB_dep_Rec.
  
 
 0.790
atpA
ATP synthase F1 sector, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family.
       0.789
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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