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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cla_0225Conserved hypothetical protein, putative endonuclease. (208 aa)    
Predicted Functional Partners:
mcrB
Conserved hypothetical protein, putative ATPase, AAA family; Pfam match to PF07728.5 AAA_5.
 
 
 0.936
Cla_1492
Conserved hypothetical protein.
  
     0.663
Cla_0114
Conserved hypothetical protein.
  
     0.659
Cla_0255
Conserved hypothetical integral membrane protein.
  
     0.630
Cla_1243
Glycosyltransferase; Pfam match to PF05704.3 Caps_synth.
  
     0.606
infB
Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.
 
     0.565
flgA
Flagellar basal body P-ring formation protein FlgA, putative; Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P- ring assembly; Belongs to the FlgA family.
  
     0.537
Cla_1303
Conserved hypothetical protein, methyltransferase type 12 domain; Pfam match to PF08242.3 Methyltransf_12.
  
     0.536
Cla_1530
Conserved hypothetical protein, hemagglutination domain protein; Pfam match to PF05860.4 Haemagg_act.
  
     0.513
Cla_0221
Conserved hypothetical protein.
       0.500
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.