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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pspAProtease IV; Pfam match to PF01343.9 Peptidase_S49. (297 aa)    
Predicted Functional Partners:
Cla_0229
Amidohydrolase family protein; Pfam match to PF01979.11 Amidohydro_1.
       0.804
trmU
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
  
  
 0.666
aroQ
3-dehydroquinate dehydratase; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family.
       0.622
pepQ
Prolidase (Xaa-Pro dipeptidase); Pfam match to PF00557.15 Peptidase_M24.
       0.622
folK
2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase; Pfam match to PF01288.11 HPPK.
       0.622
flhF
Flagellar biosynthesis (GTP-binding) protein FlhF; Pfam match to PF00448.13 SRP54.
       0.618
flhG
Conserved hypothetical protein, ATPase, ParA family; Pfam match to PF01656.14 CbiA.
       0.618
fliY
Flagellar motor switch protein FliY; Pfam match to PF01052.11 SpoA.
       0.606
Cla_0235
Conserved hypothetical integral membrane protein.
       0.596
fliA
Flagellar biosynthesis sigma factor, sigma-F; Pfam matches to PF04542.5 Sigma70_r2, and to PF04545.7 Sigma70_r4; Belongs to the sigma-70 factor family.
       0.596
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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