STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cla_0248Conserved hypothetical protein, putative bacterioferritin; Pfam match to PF00210.15 Ferritin; Belongs to the Dps family. (149 aa)    
Predicted Functional Partners:
clpS
ATP-dependent Clp protease adaptor protein ClpS; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family.
   
 
 0.868
ahpC
Alkyl hydroperoxide reductase C22 protein, AhpC/TsaA family; Pfam match to PF00578.12 AhpC-TSA.
  
  
 0.710
pgi
Glucose-6-phosphate isomerase; Pfam match to PF00342.10 PGI.
     
 0.620
raiA
Sigma 54 modulation protein/ribosomal protein S30EA; Pfam match to PF02482.10 Ribosomal_S30AE.
   
    0.584
galU
UTP-glucose-1-phosphate uridylyltransferase; Pfam match to PF00483.14 NTP_transferase.
  
    0.578
por
Pyruvate ferredoxin/flavodoxin oxidoreductase; Pfam matches to PF01855.10 POR_N, and to PF01558.9 POR.
    
 
 0.543
sodB
Superoxide dismutase (Fe); Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
 
  
 0.468
katA
Catalase; Pfam match to PF00199.10 Catalase.
  
  
 0.439
fliY
Flagellar motor switch protein FliY; Pfam match to PF01052.11 SpoA.
    
   0.406
Cla_0251
Conserved hypothetical protein; Pfam match to PF01205.10 UPF0029.
       0.402
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.