Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Cla_0251Conserved hypothetical protein; Pfam match to PF01205.10 UPF0029. (193 aa)    
Predicted Functional Partners:
pgi
Glucose-6-phosphate isomerase; Pfam match to PF00342.10 PGI.
  
    0.678
galU
UTP-glucose-1-phosphate uridylyltransferase; Pfam match to PF00483.14 NTP_transferase.
       0.656
Cla_0585
Conserved hypothetical protein.
 
    0.564
Cla_0248
Conserved hypothetical protein, putative bacterioferritin; Pfam match to PF00210.15 Ferritin; Belongs to the Dps family.
       0.468
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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