STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cla_0255Conserved hypothetical integral membrane protein. (334 aa)    
Predicted Functional Partners:
Cla_0256
Phosphohexosemutase; Pfam matches to PF02878.7 PGM_PMM_I, and to PF02879.7 PGM_PMM_II.
 
     0.831
Cla_0114
Conserved hypothetical protein.
  
     0.757
Cla_1243
Glycosyltransferase; Pfam match to PF05704.3 Caps_synth.
  
     0.739
Cla_1303
Conserved hypothetical protein, methyltransferase type 12 domain; Pfam match to PF08242.3 Methyltransf_12.
  
     0.735
flgA
Flagellar basal body P-ring formation protein FlgA, putative; Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P- ring assembly; Belongs to the FlgA family.
  
    0.720
dsbI
Disulfide bond formation protein, DsbB family; Pfam match to PF02600.7 DsbB.
  
     0.716
Cla_1564
Conserved hypothetical protein, possible methyltransferase; Pfam match to PF08241.3 Methyltransf_11.
  
     0.709
Cla_0912
Conserved hypothetical protein.
  
     0.671
Cla_1492
Conserved hypothetical protein.
  
     0.670
cmeD
Outer membrane component of efflux system; Pfam matches to PF02321.9 OEP, and to PF02321.9 OEP.
  
     0.662
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.