STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
uspAUspA-related nucleotide-binding protein; Pfam match to PF00582.17 Usp. (278 aa)    
Predicted Functional Partners:
Cla_0261
Hypothetical protein; Pfam match to PF07885.7 Ion_trans_2.
       0.784
prfB
Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.
       0.753
raiA
Sigma 54 modulation protein/ribosomal protein S30EA; Pfam match to PF02482.10 Ribosomal_S30AE.
   
  
 0.610
ogt
methylated-DNA--protein-cysteine methyltransferase; Pfam match to PF01035.11 DNA_binding_1.
   
    0.560
kefB
Sodium/hydrogen exchanger family protein; Pfam matches to PF00999.12 Na_H_Exchanger, and to PF02254.9 TrkA_N; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
  
  
 0.538
rimO
Conserved hypothetical protein, radical SAM domain family (UPF0004 domain protein); Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily.
       0.535
tilS
tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase); Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine.
       0.531
Cla_0974
Conserved hypothetical protein, MadN family (DUF6 domain protein); Pfam match to PF00892.11 DUF6.
 
     0.459
dksA
Conserved hypothetical protein, DksA-like protein; Pfam match to PF01258.8 zf-dskA_traR.
 
  
 0.424
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.