STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cla_0274Conserved hypothetical protein, ankyrin repeat family protein; Pfam match to PF00023.21 Ank. (162 aa)    
Predicted Functional Partners:
petB
Ubiquinol cytochrome c oxidoreductase, cytochrome b subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
    
  0.784
katA
Catalase; Pfam match to PF00199.10 Catalase.
  
 0.744
rpsC
30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.
    
 
 0.708
Cla_0420
TPR-domain containing protein; Pfam matches to PF00515.19 TPR_1, and to PF00515.19 TPR_1.
 
 0.681
Cla_0972
Conserved hypothetical protein, ankyrin repeat domain protein; Pfam match to PF00023.21 Ank.
  
     0.653
argH
Pfam match to PF00206.11 Lyase_1.
       0.645
dnaK
Chaperone and heat shock protein 70; Acts as a chaperone; Belongs to the heat shock protein 70 family.
   
 0.633
Cla_0730
Conserved hypothetical protein.
    
 0.629
napL
Periplasmic protein NapL.
    
 0.629
nuoA
NADH-quinone oxidoreductase, A subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain.
   
  0.625
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.