STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cla_0278Anaerobic C4-dicarboxylate transporter, putative; Pfam match to PF03606.6 DcuC. (479 aa)    
Predicted Functional Partners:
Cla_0281
MmgE/PrpD family protein; Pfam match to PF03972.5 MmgE_PrpD.
 
     0.811
purB2
Pfam match to PF00206.11 Lyase_1; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
 
     0.806
cfiP
Endoribonuclease L-PSP, putative; Pfam match to PF01042.12 Ribonuc_L-PSP.
       0.804
metC
Cystathionase beta-lyase; Pfam match to PF01053.11 Cys_Met_Meta_PP.
       0.779
Cla_0139
Anaerobic C4-dicarboxylate transporter; Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane; Belongs to the DcuA/DcuB transporter (TC 2.A.13.1) family.
  
   
 0.665
Cla_0561
C4-dicarboxylate transporter, anaerobic; Possible pseudogene; Pfam match to PF03605.5 DcuA_DcuB.
  
   
 0.663
dsbA
Thiol:disulfide interchange protein, DsbA family.
  
     0.631
cfiR
Helix-turn-helix containing protein; Pfam match to PF08348.2 PAS_6.
 
     0.617
dsbI
Disulfide bond formation protein, DsbB family; Pfam match to PF02600.7 DsbB.
  
     0.551
torC
Trimethylamine N-oxide reductase, cytochrome c-type subunit.
  
     0.531
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.