STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
kpsFArabinose-5-phosphate isomerase; Pfam matches to PF01380.13 SIS, and to PF00571.19 CBS; Belongs to the SIS family. GutQ/KpsF subfamily. (318 aa)    
Predicted Functional Partners:
kdsA
3-deoxy-D-manno-2-octulosonate-8-phosphate synthase; Pfam match to PF00793.11 DAHP_synth_1; Belongs to the KdsA family.
 
 
 0.988
kdsC
Conserved hypothetical protein, putative YrbI family phosphatase.
  
 0.953
kpsD
Capsular polysaccharide ABC transporter, periplasmic polysaccharide-binding protein; Pfam match to PF02563.7 Poly_export.
     
 0.942
kpsT
Capsular polysaccharide ABC transporter, ATP-binding protein; Pfam match to PF00005.18 ABC_tran.
     
 0.938
kdsB
3-deoxy-manno-octulosonate cytidylyltransferase; Pfam match to PF02348.10 CTP_transf_3; Belongs to the KdsB family.
 
   
 0.885
kpsE
Capsular polysaccharide export inner-membrane protein KpsE.
     
 0.876
Cla_0297
CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase, putative; Pfam matches to PF07719.8 TPR_2, and to PF00515.19 TPR_1.
   
 
 0.859
htrB
Putative lipid A biosynthesis lauroyl acyltransferase; Pfam match to PF03279.4 Lip_A_acyltrans.
 
   
 0.856
kpsM
Capsular polysaccharide ABC transporter, permease protein; Pfam match to PF01061.15 ABC2_membrane.
  
  
 0.841
kpsC
Capsular polysaccharide export protein KpsC; Pfam matches to PF05159.5 Capsule_synth, and to PF05159.5 Capsule_synth.
     
 0.816
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.